claude-science-local
Use to bring up, diagnose, or recover Anthropic's Claude Science local compchem / life-science workbench - a WSL2 daemon on 127.0.0.1:8000. Triggers - claude science, compchem or life-science workbench, :8000 down or unreachable, cs open, start claude science, science daemon wedged or off, open the science UI. Teaches the cs verbs (open, ensure, status, fix, doctor, backup, restore), why HTTP 401 means alive, the host-RAM SQLite wedge and that cs fix recovers it, cs ensure before any :8000 call, and that scope is LOCAL only.
- License 许可
- MIT
- 最近更新
- 2026-11-02
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01 前言 Front Matter
- name
- claude-science-local
- license
- MIT
- description
- Use to bring up, diagnose, or recover Anthropic's Claude Science local compchem / life-science workbench - a WSL2 daemon on 127.0.0.1:8000. Triggers - claude science, compchem or life-science workbench, :8000 down or unreachable, cs open, start claude science, science daemon wedged or off, open the science UI. Teaches the cs verbs (open, ensure, status, fix, doctor, backup, restore), why HTTP 401 means alive, the host-RAM SQLite wedge and that cs fix recovers it, cs ensure before any :8000 call, and that scope is LOCAL only.
03 SKILL.md 正文
Claude Science (local) — one-command control
Anthropic's Claude Science compchem / life-science workbench has no Windows build. It runs as a WSL2 Ubuntu daemon serving a web UI on
http://127.0.0.1:8000/. Thecsdispatcher makes it always-on and one-command from any Windows shell. LOCAL only — no remote/Tailscale.
When to use
- "Start / open Claude Science", "the science UI is down", "
:8000won't load". - Before another tool or agent calls
:8000— runcs ensurefirst. - The daemon is wedged (up but slow/timing out) or off when needed.
- You need a health readout, a recover, or a backup/restore of the science DB.
Two facts that flip every diagnosis
- HTTP 401 on
/= ALIVE.:8000is behind an auth gate; a 401 (even a 403) means the daemon is answering. Do not read 401 as "down". - Slow / timeout = WEDGED, not down. The daemon accepts the socket but
answers slowly or never. Root cause: the WSL VM is frozen under host-RAM
pressure, which stalls the SQLite
operon-cli.db(lock contention — seen up to a 164 sTxMutexhold). A naive "any HTTP response = healthy" probe is blind to this.csis latency-aware: a response>= 4 sreads as WEDGED, andcs fixrecovers it.
The cs verbs (run from PowerShell)
pwsh -File ~/source/agent-skills-toolchain/scripts/claude-science/cs.ps1 <verb>
| Verb | What it does |
|---|---|
cs open |
Ensure up (start-if-down / recover-if-wedged), wait for readiness (not a blind sleep), then open the UI in the browser. The human one-click. |
Standard flow
cs doctor — what it checks
Gotchas
Adding data sources (brief)
04 同仓库更多 Skills
clarify-requirements
Resolve genuine pre-execution ambiguity by scanning repo context, generating 1-6 grounded options, and asking 1-3 focused questions via AskUserQuestion. NOT for mid-task use (injection risk); NOT when the goal is already unambiguous; use to disambiguate vague prompts before any file edits.
openmm-md
Run FREE, open-source, Windows-native GPU molecular dynamics via the openmm-md MCP (OpenMM + CUDA on the local NVIDIA GPU). Use for protein / protein-ligand MD when you want a free stack or are on Windows without a Schrodinger license. Covers the full workflow (prepare, solvate, minimize, equilibrate, production, analyze, mmgbsa) AND an honest decision guide vs Schrodinger Desmond, including how to run Desmond legitimately on Linux or a cloud GPU with a real license. This is a deliberately LESSER free alternative and does NOT replace the schrodinger MCP tools. Do NOT use it to pick a free tool when a validated FEP+, WaterMap, IFD-MD, or Prime MM-GBSA result is actually required.
visual-review
Take screenshots of web pages and UI using Playwright for visual review and iteration
status
Diagnostic status report — shows metaswarm installation state, project setup, and potential issues
start
Use when starting work on any task, when the user mentions metaswarm, or when the user wants to begin tracked development work
setup
Interactive project setup — detects your project, configures metaswarm, writes project-local files