[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"skill:01M6DAQ9TG6BW51ZKYK0MDZC8B":3,"skill-same:01M6DAQ9TG6BW51ZKYK0MDZC8B":60},{"skillNo":4,"name":5,"nameZh":6,"description":7,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":16,"categories":17,"keywords":23,"publishedAt":35,"linkOnly":36,"markdownContent":37,"markdownBody":38,"frontMatter":39,"refName":40,"commitSha":41,"skillDirectory":42,"forksCount":14,"repositoryHtmlUrl":43,"repositoryHomepageUrl":6,"ownerHtmlUrl":44,"ownerBlogUrl":6,"ownerDescription":6,"updatedAt":45,"install":46,"resources":59},"01M6DAQ9TG6BW51ZKYK0MDZC8B","tooluniverse-ecology-biodiversity",null,"Ecology, biodiversity, and conservation biology research — species identification, invasive species assessment, pollinator ecology, population dynamics, food webs, trophic interactions, community ecology, island biogeography. Use for ANY ecology question including species distributions, invasive impacts, pollination biology, predator-prey dynamics, or conservation assessment.","Prekzursil\u002Fagent-skills-toolchain","Prekzursil","https:\u002F\u002Favatars.githubusercontent.com\u002Fu\u002F54636077?v=4","01M6DACZ1PCQHD99SCR1YXG28B","Andrei Mihai Visalon","01M6DACZ670WZF535V3WYYSS4Z",0,"MIT","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002F.agents\u002Flibrary\u002Fskills\u002Ftooluniverse-ecology-biodiversity\u002FSKILL.md",[18],{"categoryNo":19,"categoryName":20,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000021","资料检索与研究","SCENARIO","使用场景",[24,25,26,27,28,29,30,31,32,33,34],"ecology","biodiversity","tooluniverse ecology biodiversity","research","assessment","question","use","community","food webs","conservation","distributions","2026-11-10 10:12:30",false,"---\nname: tooluniverse-ecology-biodiversity\ndescription: Ecology, biodiversity, and conservation biology research — species identification, invasive species assessment, pollinator ecology, population dynamics, food webs, trophic interactions, community ecology, island biogeography. Use for ANY ecology question including species distributions, invasive impacts, pollination biology, predator-prey dynamics, or conservation assessment.\n---\n\n# Ecology & Biodiversity Research\n\n## Reasoning Strategy\n\n### 1. Species & Taxonomy Questions\nWhen a question involves identifying or comparing species:\n1. **LOOK UP DON'T GUESS** — Use `GBIF_search_species` to get taxonomy, `WoRMS_search_species` for marine organisms\n2. If the question asks about invasive species impacts, consider: ecological niche overlap, reproductive rate, predator release, and ecosystem engineering effects\n3. Use `PubMed_search_articles` or `EuropePMC_search_articles` to find studies on specific ecological impacts\n\n### 2. Invasive Species Impact Assessment\n**Reasoning framework** — when comparing invasive species impacts:\n1. **Identify the ecosystem**: What habitat\u002Fbiome is affected?\n2. **Assess impact mechanisms**: Competition? Predation? Disease vector? Habitat modification? Hybridization?\n3. **Scale of impact**: Local (single site) vs regional vs continental?\n4. **Trophic position**: Invasives at higher trophic levels (predators) often cause more damage than lower (herbivores)\n5. **Ecosystem engineering**: Species that modify habitats (beavers, earthworms, honeybees displacing native pollinators) cause outsized impacts\n6. **Look up specifics** — don't rely on general knowledge. Search for \"[species name] invasive impact [region]\" in literature\n\n### 3. Pollinator Ecology\n**Reasoning framework** for pollination questions:\n1. **Foraging behavior**: Distinguish investigation (approach\u002Fassessment) from actual feeding (proboscis insertion)\n2. **Interaction types**: Mutualistic (pollination reward), parasitic (nectar robbing), commensal\n3. **Observation methods**: Camera traps have resolution\u002FFOV limitations — consider what's identifiable at given resolution\n4. **Statistical considerations**: Observer agreement (inter-rater reliability), sampling effort, temporal patterns\n5. **Ethogram interpretation**: Each behavior category has specific start\u002Fend criteria — follow them precisely\n\n### 4. Population Dynamics\n**Reasoning framework** for population ecology questions:\n1. **Growth models**: Exponential (unlimited), logistic (K-limited), Allee effects (low-density problems)\n2. **Extinction analysis**: Distinguish deterministic extinction (r \u003C 0) from stochastic extinction (small population fluctuations)\n3. **Survival analysis**: Time-to-event analysis needs appropriate statistical tests (log-rank, Cox regression, Kaplan-Meier)\n4. **Microbial ecology**: For microbial stressor responses, use survival curve analysis with time-kill kinetics. To compare extinction points between populations, you need time-to-extinction data analyzed with survival statistics (not just endpoint comparisons)\n\n### 5. Community Ecology & Food Webs\n1. **Trophic cascades**: Removing top predators → mesopredator release → prey decline\n2. **Keystone species**: Disproportionate impact relative to abundance\n3. **Island biogeography**: Species-area relationship, distance-colonization tradeoff\n4. **Competitive exclusion**: Two species cannot stably coexist on single limiting resource (Gause's principle)\n\n### 6. Evolutionary Ecology\n1. **Aposematism**: Warning coloration signals toxicity\u002Funpalatability\n2. **Mimicry**: Batesian (harmless mimics dangerous) vs Mullerian (dangerous mimics dangerous)\n3. **Life history tradeoffs**: r-selected (many offspring, low investment) vs K-selected (few offspring, high investment)\n4. **Birth-death models**: For phylogenetic questions, identifiability issues arise with time-varying rates. Strategies to resolve: constrain rate variation, add fossil data, use molecular data calibration, or restrict to specific functional forms\n\n## Available Tools\n\n| Tool | Use For |\n|------|---------|\n| `GBIF_search_species` | Species taxonomy, occurrence data, distribution |\n| `GBIF_search_occurrences` | Where has a species been observed? |\n| `WoRMS_search_species` | Marine species taxonomy |\n| `ensembl_get_taxonomy` | Taxonomic classification |\n| `NCBIDatasets_get_taxonomy` | NCBI taxonomy lookup |\n| `PubMed_search_articles` | Literature on ecology topics |\n| `EuropePMC_search_articles` | European literature including ecology |\n\n## LOOK UP DON'T GUESS\n\nEcology questions often have counter-intuitive answers. For example:\n- Honeybees (Apis mellifera) are invasive in the Americas and displace native pollinators — this surprises people who think of bees as \"good\"\n- The most damaging invasive species are often not the most obvious ones\n- Microbial extinction points require survival analysis, not simple t-tests\n\n**Always search the literature** before answering ecology questions. Use `PubMed_search_articles` with specific terms like \"[species] invasive impact [region]\" or \"[organism] [ecological process]\".\n\n## COMPUTE, DON'T DESCRIBE\nWhen analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.\n","# Ecology & Biodiversity Research\n\n## Reasoning Strategy\n\n### 1. Species & Taxonomy Questions\nWhen a question involves identifying or comparing species:\n1. **LOOK UP DON'T GUESS** — Use `GBIF_search_species` to get taxonomy, `WoRMS_search_species` for marine organisms\n2. If the question asks about invasive species impacts, consider: ecological niche overlap, reproductive rate, predator release, and ecosystem engineering effects\n3. Use `PubMed_search_articles` or `EuropePMC_search_articles` to find studies on specific ecological impacts\n\n### 2. Invasive Species Impact Assessment\n**Reasoning framework** — when comparing invasive species impacts:\n1. **Identify the ecosystem**: What habitat\u002Fbiome is affected?\n2. **Assess impact mechanisms**: Competition? Predation? Disease vector? Habitat modification? Hybridization?\n3. **Scale of impact**: Local (single site) vs regional vs continental?\n4. **Trophic position**: Invasives at higher trophic levels (predators) often cause more damage than lower (herbivores)\n5. **Ecosystem engineering**: Species that modify habitats (beavers, earthworms, honeybees displacing native pollinators) cause outsized impacts\n6. **Look up specifics** — don't rely on general knowledge. Search for \"[species name] invasive impact [region]\" in literature\n\n### 3. Pollinator Ecology\n**Reasoning framework** for pollination questions:\n1. **Foraging behavior**: Distinguish investigation (approach\u002Fassessment) from actual feeding (proboscis insertion)\n2. **Interaction types**: Mutualistic (pollination reward), parasitic (nectar robbing), commensal\n3. **Observation methods**: Camera traps have resolution\u002FFOV limitations — consider what's identifiable at given resolution\n4. **Statistical considerations**: Observer agreement (inter-rater reliability), sampling effort, temporal patterns\n5. **Ethogram interpretation**: Each behavior category has specific start\u002Fend criteria — follow them precisely\n\n### 4. Population Dynamics\n**Reasoning framework** for population ecology questions:\n1. **Growth models**: Exponential (unlimited), logistic (K-limited), Allee effects (low-density problems)\n2. **Extinction analysis**: Distinguish deterministic extinction (r \u003C 0) from stochastic extinction (small population fluctuations)\n3. **Survival analysis**: Time-to-event analysis needs appropriate statistical tests (log-rank, Cox regression, Kaplan-Meier)\n4. **Microbial ecology**: For microbial stressor responses, use survival curve analysis with time-kill kinetics. To compare extinction points between populations, you need time-to-extinction data analyzed with survival statistics (not just endpoint comparisons)\n\n### 5. Community Ecology & Food Webs\n1. **Trophic cascades**: Removing top predators → mesopredator release → prey decline\n2. **Keystone species**: Disproportionate impact relative to abundance\n3. **Island biogeography**: Species-area relationship, distance-colonization tradeoff\n4. **Competitive exclusion**: Two species cannot stably coexist on single limiting resource (Gause's principle)\n\n### 6. Evolutionary Ecology\n1. **Aposematism**: Warning coloration signals toxicity\u002Funpalatability\n2. **Mimicry**: Batesian (harmless mimics dangerous) vs Mullerian (dangerous mimics dangerous)\n3. **Life history tradeoffs**: r-selected (many offspring, low investment) vs K-selected (few offspring, high investment)\n4. **Birth-death models**: For phylogenetic questions, identifiability issues arise with time-varying rates. Strategies to resolve: constrain rate variation, add fossil data, use molecular data calibration, or restrict to specific functional forms\n\n## Available Tools\n\n| Tool | Use For |\n|------|---------|\n| `GBIF_search_species` | Species taxonomy, occurrence data, distribution |\n| `GBIF_search_occurrences` | Where has a species been observed? |\n| `WoRMS_search_species` | Marine species taxonomy |\n| `ensembl_get_taxonomy` | Taxonomic classification |\n| `NCBIDatasets_get_taxonomy` | NCBI taxonomy lookup |\n| `PubMed_search_articles` | Literature on ecology topics |\n| `EuropePMC_search_articles` | European literature including ecology |\n\n## LOOK UP DON'T GUESS\n\nEcology questions often have counter-intuitive answers. For example:\n- Honeybees (Apis mellifera) are invasive in the Americas and displace native pollinators — this surprises people who think of bees as \"good\"\n- The most damaging invasive species are often not the most obvious ones\n- Microbial extinction points require survival analysis, not simple t-tests\n\n**Always search the literature** before answering ecology questions. Use `PubMed_search_articles` with specific terms like \"[species] invasive impact [region]\" or \"[organism] [ecological process]\".\n\n## COMPUTE, DON'T DESCRIBE\nWhen analysis requires computation (statistics, data processing, scoring, enrichment), write and run Python code via Bash. Don't describe what you would do — execute it and report actual results. Use ToolUniverse tools to retrieve data, then Python (pandas, scipy, statsmodels, matplotlib) to analyze it.\n",{"name":5,"description":7},"main","a298c929b6cbd662e1fce54302ce520d5ceea1a5",".agents\u002Flibrary\u002Fskills\u002Ftooluniverse-ecology-biodiversity","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain","https:\u002F\u002Fgithub.com\u002FPrekzursil","2026-11-02 14:30:57",{"source":8,"skillName":5,"commands":47,"prompt":57,"zipAvailable":58},[48,51,54],{"tool":49,"command":50},"npx","npx skills add Prekzursil\u002Fagent-skills-toolchain --skill tooluniverse-ecology-biodiversity",{"tool":52,"command":53},"bunx","bunx skills add Prekzursil\u002Fagent-skills-toolchain --skill tooluniverse-ecology-biodiversity",{"tool":55,"command":56},"pnpm","pnpm dlx skills add Prekzursil\u002Fagent-skills-toolchain --skill tooluniverse-ecology-biodiversity","安装技能，技能地址：https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002F.agents\u002Flibrary\u002Fskills\u002Ftooluniverse-ecology-biodiversity\u002FSKILL.md",true,[],[61,82,111,138,152,168],{"skillNo":62,"name":63,"nameZh":6,"description":64,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":65,"categories":66,"keywords":67,"publishedAt":35},"01M6DF7D7478R55P46REYH4QAC","clarify-requirements","Resolve genuine pre-execution ambiguity by scanning repo context, generating 1-6 grounded options, and asking 1-3 focused questions via AskUserQuestion. NOT for mid-task use (injection risk); NOT when the goal is already unambiguous; use to disambiguate vague prompts before any file edits.","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Fworkspace-hooks\u002Fskills\u002Fclarify-requirements\u002FSKILL.md",[],[68,69,70,71,72,73,74,75,76,30,77,78,79,80,81],"clarify requirements","clarify","requirements","risk","options","task","prompts","goal","scanning","context","repo","injection","execution","file",{"skillNo":83,"name":84,"nameZh":6,"description":85,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":86,"categories":87,"keywords":91,"publishedAt":35},"01M6DF79CA4BHJS66J8EZDBPWJ","openmm-md","Run FREE, open-source, Windows-native GPU molecular dynamics via the openmm-md MCP (OpenMM + CUDA on the local NVIDIA GPU). Use for protein \u002F protein-ligand MD when you want a free stack or are on Windows without a Schrodinger license. Covers the full workflow (prepare, solvate, minimize, equilibrate, production, analyze, mmgbsa) AND an honest decision guide vs Schrodinger Desmond, including how to run Desmond legitimately on Linux or a cloud GPU with a real license. This is a deliberately LESSER free alternative and does NOT replace the schrodinger MCP tools. Do NOT use it to pick a free tool when a validated FEP+, WaterMap, IFD-MD, or Prime MM-GBSA result is actually required.","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Fmcp\u002Fopenmm-md-mcp\u002Fskill\u002Fopenmm-md\u002FSKILL.md",[88],{"categoryNo":89,"categoryName":90,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000023","Skill与智能体开发",[92,93,94,95,96,97,98,99,100,101,102,103,104,105,30,106,107,108,109,110],"openmm md","how","decision","pick","linux","analyze","tool","stack","open","NVIDIA","gpu","license","workflow","windows","free","molecular dynamics","local","do","MCP",{"skillNo":112,"name":113,"nameZh":6,"description":114,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":115,"categories":116,"keywords":123,"publishedAt":35},"01M6DF76C1MG85VEWP8VZCBNMN","visual-review","Take screenshots of web pages and UI using Playwright for visual review and iteration","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fvisual-review\u002FSKILL.md",[117,120],{"categoryNo":118,"categoryName":119,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000003","演示文稿",{"categoryNo":121,"categoryName":122,"taxonomyType":21,"taxonomyTypeDesc":22},"01JBSEEDCAT000000000000008","测试与质量",[124,125,126,127,128,129,130,131,132,133,93,134,135,136,137],"review","visual","visual review","pages","web","false","iteration","take","check","slides","ui","screenshot","playwright","screenshots",{"skillNo":139,"name":140,"nameZh":6,"description":141,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":142,"categories":143,"keywords":144,"publishedAt":35},"01M6DF73AQVCBZKEN0YXEX9FXP","status","Diagnostic status report — shows metaswarm installation state, project setup, and potential issues","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fstatus\u002FSKILL.md",[],[140,145,146,147,148,149,150,151],"setup","report","project","installation","project setup","issues","state",{"skillNo":153,"name":154,"nameZh":6,"description":155,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":156,"categories":157,"keywords":159,"publishedAt":35},"01M6DF6X6C2XB0P6GX76P7TTYV","start","Use when starting work on any task, when the user mentions metaswarm, or when the user wants to begin tracked development work","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fstart\u002FSKILL.md",[158],{"categoryNo":89,"categoryName":90,"taxonomyType":21,"taxonomyTypeDesc":22},[154,160,73,161,162,163,30,164,165,166,167],"start issue","issue","ready","work on issue","user","work","work on","development",{"skillNo":169,"name":145,"nameZh":6,"description":170,"descriptionZh":6,"repositoryFullName":8,"ownerLogin":9,"ownerAvatarUrl":10,"ownerAccountNo":11,"ownerDisplayName":12,"repositoryNo":13,"starsCount":14,"licenseSpdxId":15,"licenseFileUrl":6,"sourceHtmlUrl":171,"categories":172,"keywords":173,"publishedAt":35},"01M6DF6QMJ9AJKFKHHKRT005PQ","Interactive project setup — detects your project, configures metaswarm, writes project-local files","https:\u002F\u002Fgithub.com\u002FPrekzursil\u002Fagent-skills-toolchain\u002Fblob\u002Fmain\u002Ftools\u002Feditor\u002Fmetaswarm\u002Fskills\u002Fsetup\u002FSKILL.md",[],[145,147,108,174,149,175],"files","interactive"]